fd5d5111db
* changed settings for personal hub. * htop added to singleuser. * better singleuser. * config updated. * bad merge. * standard updates. * updates to builds. * updated. * updated path. * loc * stable build! * lab enabled. * dockerspawner bug fix. * stable upgrade. * remove env ending. * minimal installation script with python 2. * git enabled. * env. * upgraded hub for hartke. * setting cull idle servers. * default upgrade now working. * options. * tweaks for personal settings. * personalization. * update. * attempting full latex build. * lab build. * typo * separated layers. * got a fancy environment working * allspark. * updated personal hub settings. * allspark done. * updates. tflow. * octave deps. * rstudio and redundancy cleanup. * WIP * everything WORKS!!! * stable state with updates. * stuff to improve the experience. * merge. * working state. * settings. * settings for carme, successful build * settings tweaked for lab, sudo, debugger * working on carme * upgrade to python 3.9 and remove conda install steps * updates * major cleanup (#6) * update for slalom * disable options and grant sudo to all * vscode launcher * default url * pkgs * config * updates * typo * update * dont mount extras * update info in config * adding install scripts, cleaning up dockerfile * refactor class * clean up logic * carme * upgrades * update * swap order * spacing * updates * paths * rearranging * cleanup * lsp * cleanup * culler service update * unecessary option * more unecessary args * Update .env * monitoring Co-authored-by: mathematicalmichael <mpilosov@gmail.com>
117 lines
2.8 KiB
Plaintext
117 lines
2.8 KiB
Plaintext
FROM jupyter/r-notebook
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###### R ENV #######
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USER root
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# R pre-requisites
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RUN apt-get update && \
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apt-get install -y --no-install-recommends \
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fonts-dejavu \
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unixodbc \
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unixodbc-dev \
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r-cran-rodbc \
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gfortran \
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gcc && \
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rm -rf /var/lib/apt/lists/*
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# Fix for devtools https://github.com/conda-forge/r-devtools-feedstock/issues/4
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RUN ln -s /bin/tar /bin/gtar
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# R pre-requisites
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RUN apt-get update && \
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apt-get install -y --no-install-recommends \
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fonts-dejavu \
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unixodbc \
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unixodbc-dev \
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r-cran-rodbc \
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gfortran \
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gcc && \
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apt-get clean && rm -rf /var/lib/apt/lists/*
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USER $NB_UID
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# R packages
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RUN conda install --quiet --yes \
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'r-base=4.0.3' \
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'r-caret=6.*' \
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'r-crayon=1.4*' \
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'r-devtools=2.3*' \
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'r-forecast=8.13*' \
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'r-hexbin=1.28*' \
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'r-htmltools=0.5*' \
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'r-htmlwidgets=1.5*' \
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'r-irkernel=1.1*' \
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'r-nycflights13=1.0*' \
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'r-randomforest=4.6*' \
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'r-rcurl=1.98*' \
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'r-rmarkdown=2.6*' \
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'r-rodbc=1.3*' \
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'r-rsqlite=2.2*' \
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'r-shiny=1.6*' \
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'r-tidyverse=1.3*' \
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'unixodbc=2.3.*' \
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'r-tidymodels=0.1*'
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RUN \
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conda clean --all -f -y && \
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fix-permissions "${CONDA_DIR}" && \
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fix-permissions "/home/${NB_USER}"
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# Install e1071 R package (dependency of the caret R package)
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#RUN conda install --quiet --yes r-e1071
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# RStudio
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RUN python3 -m pip install jupyter-rsession-proxy
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RUN cd /tmp/ && \
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git clone --depth 1 https://github.com/jupyterhub/jupyter-server-proxy && \
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cd jupyter-server-proxy/jupyterlab-server-proxy && \
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npm install && npm run build && jupyter labextension link . && \
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npm run build && jupyter lab build
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# install rstudio-server
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USER root
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RUN apt-get update && \
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curl --silent -L --fail https://download2.rstudio.org/server/bionic/amd64/rstudio-server-1.4.1103-amd64.deb > /tmp/rstudio.deb && \
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apt-get install -y /tmp/rstudio.deb && \
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rm /tmp/rstudio.deb
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ENV PATH=$PATH:/usr/lib/rstudio-server/bin
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# I do not think these are necessary
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#RUN apt-get update && \
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# apt-get install -y --no-install-recommends \
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# libapparmor1 \
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# libedit2 \
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# lsb-release \
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# psmisc \
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# libssl1.0.0 \
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# ;
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#RUN apt-get install gdebi-core
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RUN curl --silent -L --fail https://download3.rstudio.org/ubuntu-14.04/x86_64/shiny-server-1.5.9.923-amd64.deb > /tmp/rshiny.deb && \
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apt-get install -y /tmp/rshiny.deb && \
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rm /tmp/rshiny.deb
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# Cleanup
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RUN rm -rf $CONDA_DIR/share/jupyter/lab/staging && \
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rm -rf /home/$NB_USER/.cache/yarn && \
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apt-get -qq purge && \
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apt-get -qq clean && \
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rm -rf /var/lib/apt/lists/*
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USER $NB_UID
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# Final cleaning
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# build and clean up (for good measure)
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RUN npm cache clean --force && \
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rm -rf /home/$NB_USER/.node-gyp
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RUN conda clean --all -f -y && \
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fix-permissions $CONDA_DIR && \
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fix-permissions /home/$NB_USER
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USER $NB_UID
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R
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