ARG DOCKER_NOTEBOOK_IMAGE
FROM $DOCKER_NOTEBOOK_IMAGE

ARG JUPYTERHUB_VERSION
# Install vim in case someone wants to use the terminal

USER root

RUN apt-get update && \
    apt-get install -y vim && \
    apt-get install -y gcc && \
    rm -rf /var/lib/apt/lists/*
    
    
RUN python3 -m pip install --no-cache jupyterhub==$JUPYTERHUB_VERSION nbresuse
#any additional installations go here.

LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"
ARG NB_USER="student"
ARG NB_UID="1001"
ARG NB_GID="100"

USER root

# Install all OS dependencies for notebook server that starts but lacks all
# features (e.g., download as all possible file formats)
ENV DEBIAN_FRONTEND noninteractive
RUN apt-get update && apt-get -yq dist-upgrade \
 && apt-get install -yq --no-install-recommends \
    wget \
    bzip2 \
    ca-certificates \
    sudo \
    locales \
    fonts-liberation \
 && rm -rf /var/lib/apt/lists/*

RUN echo "en_US.UTF-8 UTF-8" > /etc/locale.gen && \
    locale-gen

# Configure environment
ENV CONDA_DIR=/opt/conda \
    SHELL=/bin/bash \
    NB_USER=$NB_USER \
    NB_UID=$NB_UID \
    NB_GID=$NB_GID \
    LC_ALL=en_US.UTF-8 \
    LANG=en_US.UTF-8 \
    LANGUAGE=en_US.UTF-8
ENV PATH=$CONDA_DIR/bin:$PATH \
    HOME=/home/$NB_USER


ADD fix-permissions /usr/local/bin/fix-permissions
# Create jovyan user with UID=1000 and in the 'users' group
# and make sure these dirs are writable by the `users` group.
RUN groupadd wheel -g 11 && \
    echo "auth required pam_wheel.so use_uid" >> /etc/pam.d/su && \
    useradd -m -s /bin/bash -N -u $NB_UID $NB_USER && \
    mkdir -p $CONDA_DIR && \
    chown $NB_USER:$NB_GID $CONDA_DIR && \
    chmod g+w /etc/passwd && \
    fix-permissions $HOME && \
    fix-permissions $CONDA_DIR

USER $NB_UID

# Setup work directory for backward-compatibility
RUN mkdir /home/$NB_USER/work && \
    fix-permissions /home/$NB_USER

# Install conda as jovyan and check the md5 sum provided on the download site
ENV MINICONDA_VERSION 4.5.11
RUN cd /tmp && \
    wget --quiet https://repo.continuum.io/miniconda/Miniconda3-${MINICONDA_VERSION}-Linux-x86_64.sh && \
    echo "e1045ee415162f944b6aebfe560b8fee *Miniconda3-${MINICONDA_VERSION}-Linux-x86_64.sh" | md5sum -c - && \
    /bin/bash Miniconda3-${MINICONDA_VERSION}-Linux-x86_64.sh -f -b -p $CONDA_DIR && \
    rm Miniconda3-${MINICONDA_VERSION}-Linux-x86_64.sh && \
    $CONDA_DIR/bin/conda config --system --prepend channels conda-forge && \
    $CONDA_DIR/bin/conda config --system --set auto_update_conda false && \
    $CONDA_DIR/bin/conda config --system --set show_channel_urls true && \
    $CONDA_DIR/bin/conda install --quiet --yes conda="${MINICONDA_VERSION%.*}.*" && \
    $CONDA_DIR/bin/conda update --all --quiet --yes && \
    conda clean -tipsy && \
    rm -rf /home/$NB_USER/.cache/yarn && \
    fix-permissions $CONDA_DIR && \
    fix-permissions /home/$NB_USER

USER root
RUN ln -s /usr/bin/python3 /usr/bin/python && \
    mkdir /.symlinks && \
    cd /.symlinks &&
    ln -s $CONDA_DIR/conda conda && \
    ln -s $CONDA_DIR/activate activate && \
    ln -s $CONDA_DIR/deactivate deactivate && \
    export PATH=/.symlinks:$PATH

USER $NB_UID
# Install Tini
RUN conda install --quiet --yes 'tini=0.18.0' && \
    conda list tini | grep tini | tr -s ' ' | cut -d ' ' -f 1,2 >> $CONDA_DIR/conda-meta/pinned && \
    conda clean -tipsy && \
    fix-permissions $CONDA_DIR && \
    fix-permissions /home/$NB_USER

# Install Jupyter Notebook, Lab, and Hub
# Generate a notebook server config
# Cleanup temporary files
# Correct permissions
# Do all this in a single RUN command to avoid duplicating all of the
# files across image layers when the permissions change
RUN conda install --quiet --yes \
    'notebook=5.7.2' \
    'jupyterhub=0.9.4' \
    'jupyterlab=0.35.4' && \
    conda clean -tipsy && \
    jupyter labextension install @jupyterlab/hub-extension@^0.12.0 && \
    npm cache clean --force && \
    jupyter notebook --generate-config && \
    rm -rf $CONDA_DIR/share/jupyter/lab/staging && \
    rm -rf /home/$NB_USER/.cache/yarn && \
    fix-permissions $CONDA_DIR && \
    fix-permissions /home/$NB_USER

USER root

EXPOSE 8888
WORKDIR $HOME

# Configure container startup
ENTRYPOINT ["tini", "-g", "--"]
CMD ["start-notebook.sh"]

### Minimal Notebook:

USER root

# Install all OS dependencies for fully functional notebook server
RUN apt-get update && apt-get install -yq --no-install-recommends \
    build-essential \
    emacs \
    git \
    inkscape \
    jed \
    libsm6 \
    libxext-dev \
    libxrender1 \
    lmodern \
    netcat \
    pandoc \
    python-dev \
    texlive-fonts-extra \
    texlive-fonts-recommended \
    texlive-generic-recommended \
    texlive-latex-base \
    texlive-latex-extra \
    texlive-xetex \
    unzip \
    nano \
    && rm -rf /var/lib/apt/lists/*




### Now onto scipy-notebook


# ffmpeg for matplotlib anim
RUN apt-get update && \
    apt-get install -y --no-install-recommends ffmpeg && \
    rm -rf /var/lib/apt/lists/*


USER $NB_UID

# Install Python 3 packages
# Remove pyqt and qt pulled in for matplotlib since we're only ever going to
# use notebook-friendly backends in these images
RUN conda install --quiet --yes \
    'conda-forge::blas=*=openblas' \
    'ipywidgets=7.2*' \
    'pandas=0.23*' \
    'numexpr=2.6*' \
    'matplotlib=2.2*' \
    'scipy=1.1*' \
    'seaborn=0.9*' \
    'scikit-learn=0.20*' \
    'scikit-image=0.14*' \
    'sympy=1.1*' \
    'cython=0.28*' \
    'patsy=0.5*' \
    'statsmodels=0.9*' \
    'cloudpickle=0.5*' \
    'dill=0.2*' \
    'numba=0.38*' \
    'bokeh=0.13*' \
    'sqlalchemy=1.2*' \
    'hdf5=1.10*' \
    'h5py=2.7*' \
    'vincent=0.4.*' \
    'beautifulsoup4=4.6.*' \
    'protobuf=3.*' \
    'xlrd'  && \
    conda remove --quiet --yes --force qt pyqt && \
    conda clean -tipsy && \
    # Activate ipywidgets extension in the environment that runs the notebook server
    jupyter nbextension enable --py widgetsnbextension --sys-prefix && \
    # Also activate ipywidgets extension for JupyterLab
    # Check this URL for most recent compatibilities
    # https://github.com/jupyter-widgets/ipywidgets/tree/master/packages/jupyterlab-manager
    jupyter labextension install @jupyter-widgets/jupyterlab-manager@^0.38.1 && \
    jupyter labextension install jupyterlab_bokeh@0.6.3 && \
    npm cache clean --force && \
    rm -rf $CONDA_DIR/share/jupyter/lab/staging && \
    rm -rf /home/$NB_USER/.cache/yarn && \
    rm -rf /home/$NB_USER/.node-gyp && \
    fix-permissions $CONDA_DIR && \
    fix-permissions /home/$NB_USER

# Install facets which does not have a pip or conda package at the moment
RUN cd /tmp && \
    git clone https://github.com/PAIR-code/facets.git && \
    cd facets && \
    jupyter nbextension install facets-dist/ --sys-prefix && \
    cd && \
    rm -rf /tmp/facets && \
    fix-permissions $CONDA_DIR && \
    fix-permissions /home/$NB_USER

# Import matplotlib the first time to build the font cache.
ENV XDG_CACHE_HOME /home/$NB_USER/.cache/
RUN MPLBACKEND=Agg python -c "import matplotlib.pyplot" && \
    fix-permissions /home/$NB_USER

USER $NB_UID

# Add local files as late as possible to avoid cache busting

COPY start.sh /usr/local/bin/
COPY start-notebook.sh /usr/local/bin/
COPY start-singleuser.sh /usr/local/bin/
COPY jupyter_notebook_config.py /etc/jupyter/
RUN fix-permissions /etc/jupyter/