cant quite get rstudio working in the image but its good enough and works.

This commit is contained in:
M. Pilosov 2019-01-03 17:05:25 -07:00
parent 7a8931e74c
commit f7760967a6

View File

@ -12,6 +12,75 @@ RUN apt-get update && \
USER jovyan
RUN conda install rstudio
RUN python3 -m pip install --no-cache jupyterhub==$JUPYTERHUB_VERSION nbresuse jupyter-rsession-proxy
RUN conda install -c conda-forge fenics
USER root
# R pre-requisites
RUN apt-get update && \
apt-get install -y --no-install-recommends \
fonts-dejavu \
tzdata \
gfortran \
gcc && \
rm -rf /var/lib/apt/lists/*
USER $NB_UID
# R packages
RUN conda install --quiet --yes \
'r-base=3.5.1' \
'r-irkernel=0.8*' \
'r-plyr=1.8*' \
'r-devtools=1.13*' \
'r-tidyverse=1.2*' \
'r-shiny=1.2*' \
'r-rmarkdown=1.11*' \
'r-forecast=8.2*' \
'r-rsqlite=2.1*' \
'r-reshape2=1.4*' \
'r-nycflights13=1.0*' \
'r-caret=6.0*' \
'r-rcurl=1.95*' \
'r-crayon=1.3*' \
'r-randomforest=4.6*' \
'r-htmltools=0.3*' \
'r-sparklyr=0.9*' \
'r-htmlwidgets=1.2*' \
'r-hexbin=1.27*' && \
conda clean -tipsy && \
fix-permissions $CONDA_DIR
RUN conda install rstudio && \
fix-permissions $CONDA_DIR
USER root
RUN apt-get update && \
apt-get install -y --no-install-recommends \
libapparmor1 \
libedit2 \
lsb-release \
psmisc \
libssl1.0.0 \
;
# You can use rsession from rstudio's desktop package as well.
ENV RSTUDIO_PKG=rstudio-server-1.0.136-amd64.deb
RUN wget -q http://download2.rstudio.org/${RSTUDIO_PKG}
RUN dpkg -i ${RSTUDIO_PKG}
RUN rm ${RSTUDIO_PKG}
RUN apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN python3 -m pip install jupyterhub jupyter-rsession-proxy \
&& jupyter labextension install jupyterlab-server-proxy
USER jovyan
RUN python3 -m pip install git+https://github.com/jupyterhub/jupyter-rsession-proxy
# The desktop package uses /usr/lib/rstudio/bin
ENV PATH="${PATH}:/usr/lib/rstudio-server/bin"
ENV LD_LIBRARY_PATH="/usr/lib/R/lib:/lib:/usr/lib/x86_64-linux-gnu:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server:/opt/conda/lib/R/lib"