mm/jupyterhub-deploy-docker
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MPI added.

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mathematicalmichael 2019-01-30 09:58:22 -07:00
parent c8e6eafa3a
commit 5e48f8e431
1 changed files with 9 additions and 5 deletions
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singleuser/Dockerfile
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@ -1,7 +1,9 @@
ARG DOCKER_NOTEBOOK_IMAGE ARG DOCKER_NOTEBOOK_IMAGE
ARG DISPLAY
FROM $DOCKER_NOTEBOOK_IMAGE FROM $DOCKER_NOTEBOOK_IMAGE
ARG JUPYTERHUB_VERSION ARG JUPYTERHUB_VERSION
#any additional installations go here. #any additional installations go here.
RUN export DISPLAY=$DISPLAY
USER root USER root
@ -12,19 +14,22 @@ RUN apt-get update && \
fonts-dejavu \ fonts-dejavu \
tzdata \ tzdata \
gfortran \ gfortran \
gcc && \ gcc
rm -rf /var/lib/apt/lists/* # finish off with MPI dependencies
RUN sudo apt-get install mpich libmpich-dev && \
rm -rf /var/lib/apt/lists/*
USER jovyan USER jovyan
RUN python3 -m pip install --no-cache jupyterhub==$JUPYTERHUB_VERSION nbresuse RUN python3 -m pip install --no-cache jupyterhub==$JUPYTERHUB_VERSION nbresuse
RUN conda install -c conda-forge fenics RUN conda install -c conda-forge fenics
RUN python3 -m pip install ipyparallel RUN python3 -m pip install ipyparallel mpi4py
RUN ipython profile create --parallel --profile=mpi RUN ipython profile create --parallel --profile=mpi
RUN echo "c.IPClusterEngines.engine_launcher_class = 'MPIEngineSetLauncher'" >> /home/jovyan/.ipython/profile_mpi/ipcluster_config.py RUN echo "c.IPClusterEngines.engine_launcher_class = 'MPIEngineSetLauncher'" >> /home/jovyan/.ipython/profile_mpi/ipcluster_config.py
RUN conda create --quiet --yes -p $CONDA_DIR/envs/python2 python=2.7 ipython ipykernel kernda numpy pandas matplotlib ipywidgets yaml RUN conda create --quiet --yes -p $CONDA_DIR/envs/python2 python=2.7 ipython ipykernel kernda numpy pandas matplotlib ipywidgets yaml ipyparallel mpi4py
RUN /opt/conda/envs/python2/bin/ipython profile create --parallel --profile=mpi
USER root USER root
@ -65,4 +70,3 @@ ENV LD_LIBRARY_PATH="/usr/lib/R/lib:/lib:/usr/lib/jvm/java-7-openjdk-amd64/jre/l
USER jovyan USER jovyan
RUN echo "export EDITOR=/usr/bin/vim" >> /home/jovyan/.bashrc RUN echo "export EDITOR=/usr/bin/vim" >> /home/jovyan/.bashrc
RUN echo "source /home/jovyan/work/.bash_custom" >> /home/jovyan/.bashrc